example.R

Execution end time

2025-12-01T13:05:27 Coordinated Universal Time

Path to script

/tmp/RtmpcvzNUO/file1bed6c7a78c4/example.R

Summary

success

Input

Time	File
2025-12-01 13:05:16	/dev/urandom
2025-12-01 13:05:17	/home/runner/.Rprofile

Output

Time	File
2025-12-01 13:05:16	/dev/null
2025-12-01 13:05:16	/home/runner/.cache/deno/location_data/28cae0874d2cd1a477303d1189f80977214036c3c5b0efb610c4fbbeddbd8b3e/local_storage
2025-12-01 13:05:16	/home/runner/.cache/deno/location_data/28cae0874d2cd1a477303d1189f80977214036c3c5b0efb610c4fbbeddbd8b3e/local_storage-wal
2025-12-01 13:05:16	/home/runner/.cache/deno/location_data/28cae0874d2cd1a477303d1189f80977214036c3c5b0efb610c4fbbeddbd8b3e/local_storage-shm

Removed

No files

Script

Setup

library(dplyr)

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

library(ggplot2)

Prepare data

x <- mtcars |>
  as_tibble(rownames = "car")

print(x)

[38;5;246m# A tibble: 32 × 12[39m
   car           mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb
   [3m[38;5;246m<chr>[39m[23m       [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m
[38;5;250m 1[39m Mazda RX4    21       6  160    110  3.9   2.62  16.5     0     1     4     4
[38;5;250m 2[39m Mazda RX4 …  21       6  160    110  3.9   2.88  17.0     0     1     4     4
[38;5;250m 3[39m Datsun 710   22.8     4  108     93  3.85  2.32  18.6     1     1     4     1
[38;5;250m 4[39m Hornet 4 D…  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1
[38;5;250m 5[39m Hornet Spo…  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2
[38;5;250m 6[39m Valiant      18.1     6  225    105  2.76  3.46  20.2     1     0     3     1
[38;5;250m 7[39m Duster 360   14.3     8  360    245  3.21  3.57  15.8     0     0     3     4
[38;5;250m 8[39m Merc 240D    24.4     4  147.    62  3.69  3.19  20       1     0     4     2
[38;5;250m 9[39m Merc 230     22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2
[38;5;250m10[39m Merc 280     19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4
[38;5;246m# ℹ 22 more rows[39m

Create and save plot

ggplot(data = x) +
  geom_point(mapping = aes(x = mpg, y = hp, size = wt, colour = as.factor(am)))

ggsave("plot1.png")

[1m[22mSaving 7 x 5 in image

Session info

Platform

Setting	Value
version	R version 4.5.2 (2025-10-31)
os	Ubuntu 24.04.3 LTS
system	x86_64, linux-gnu
ui	X11
language	en
collate	C.UTF-8
ctype	C.UTF-8
tz	UTC
date	2025-12-01
pandoc	3.1.11 @ /opt/hostedtoolcache/pandoc/3.1.11/x64/ (via rmarkdown)
quarto	1.8.26 @ /usr/local/bin/quarto

R packages used directly

Package	Version	Source
dplyr	1.1.4	RSPM
ggplot2	4.0.1	RSPM
knitr	1.50	RSPM
rmarkdown	2.30	RSPM
sessioninfo	1.2.3	RSPM

R packages used indirectly

Package	Version	Source
cli	3.6.5	RSPM
digest	0.6.39	RSPM
evaluate	1.0.5	RSPM
farver	2.1.2	RSPM
fastmap	1.2.0	RSPM
generics	0.1.4	RSPM
glue	1.8.0	RSPM
gtable	0.3.6	RSPM
htmltools	0.5.8.1	RSPM
jsonlite	2.0.0	RSPM
labeling	0.4.3	RSPM
lattice	0.22-7	CRAN (R 4.5.2)
lifecycle	1.0.4	RSPM
magrittr	2.0.4	RSPM
Matrix	1.7-4	CRAN (R 4.5.2)
pillar	1.11.1	RSPM
pkgconfig	2.0.3	RSPM
png	0.1-8	RSPM
R6	2.6.1	RSPM
ragg	1.5.0	RSPM
RColorBrewer	1.1-3	RSPM
Rcpp	1.1.0	RSPM
reticulate	1.44.1	RSPM
rlang	1.1.6	RSPM
S7	0.2.1	RSPM
scales	1.4.0	RSPM
systemfonts	1.3.1	RSPM
textshaping	1.0.4	RSPM
tibble	3.3.0	RSPM
tidyselect	1.2.1	RSPM
utf8	1.2.6	RSPM
vctrs	0.6.5	RSPM
withr	3.0.2	RSPM
xfun	0.54	RSPM
yaml	2.3.10	RSPM

Environment variables

Variable	Value
_R_CHECK_SYSTEM_CLOCK_	FALSE
ACCEPT_EULA	Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE	/opt/actionarchivecache
AGENT_TOOLSDIRECTORY	/opt/hostedtoolcache
ANDROID_HOME	/usr/local/lib/android/sdk
ANDROID_NDK	/usr/local/lib/android/sdk/ndk/27.3.13750724
ANDROID_NDK_HOME	/usr/local/lib/android/sdk/ndk/27.3.13750724
ANDROID_NDK_LATEST_HOME	/usr/local/lib/android/sdk/ndk/29.0.14206865
ANDROID_NDK_ROOT	/usr/local/lib/android/sdk/ndk/27.3.13750724
ANDROID_SDK_ROOT	/usr/local/lib/android/sdk
ANT_HOME	/usr/share/ant
AZURE_EXTENSION_DIR	/opt/az/azcliextensions
BIBINPUTS	::/home/runner/work/whirl/whirl/vignettes/articles:/opt/R/4.5.2/lib/R/share/texmf/tex/latex
BOOTSTRAP_HASKELL_NONINTERACTIVE	1
BSTINPUTS	:/home/runner/work/whirl/whirl/vignettes/articles:/opt/R/4.5.2/lib/R/share/texmf/bibtex/bst
BUNDLE_EXT	linux-amd64.deb
CALLR_IS_RUNNING	true
CHROME_BIN	/usr/bin/google-chrome
CHROMEWEBDRIVER	/usr/local/share/chromedriver-linux64
CI	true
CONDA	/usr/share/miniconda
CYGWIN	nodosfilewarning
DEBIAN_FRONTEND	noninteractive
DENO_DOM_PLUGIN	/opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK	1
DENO_TLS_CA_STORE	system,mozilla
DOTNET_MULTILEVEL_LOOKUP	0
DOTNET_NOLOGO	1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE	1
EDGEWEBDRIVER	/usr/local/share/edge_driver
EDITOR	vi
ENABLE_RUNNER_TRACING	true
GECKOWEBDRIVER	/usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX	/usr/local
GITHUB_ACTION	__run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS	true
GITHUB_ACTOR	akselthomsen
GITHUB_ACTOR_ID	14150030
GITHUB_API_URL	https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV	/home/runner/work/_temp/_runner_file_commands/set_env_f9584c0b-eea9-414a-b234-b40ada614c1b
GITHUB_EVENT_NAME	push
GITHUB_GRAPHQL_URL	https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB	pkgdown
GITHUB_OUTPUT	/home/runner/work/_temp/_runner_file_commands/set_output_f9584c0b-eea9-414a-b234-b40ada614c1b
GITHUB_REF	refs/heads/main
GITHUB_REF_NAME	main
GITHUB_REF_PROTECTED	true
GITHUB_REF_TYPE	branch
GITHUB_REPOSITORY	NovoNordisk-OpenSource/whirl
GITHUB_REPOSITORY_ID	865991741
GITHUB_REPOSITORY_OWNER	NovoNordisk-OpenSource
GITHUB_REPOSITORY_OWNER_ID	129066790
GITHUB_RETENTION_DAYS	90
GITHUB_RUN_ATTEMPT	1
GITHUB_RUN_ID	19823564482
GITHUB_RUN_NUMBER	491
GITHUB_SERVER_URL	https://github.com
GITHUB_SHA	f262c31b7faa74b7d14f5f79cc778c17969153ff
GITHUB_STATE	/home/runner/work/_temp/_runner_file_commands/save_state_f9584c0b-eea9-414a-b234-b40ada614c1b
GITHUB_STEP_SUMMARY	/home/runner/work/_temp/_runner_file_commands/step_summary_f9584c0b-eea9-414a-b234-b40ada614c1b
GITHUB_TRIGGERING_ACTOR	akselthomsen
GITHUB_WORKFLOW	All actions
GITHUB_WORKFLOW_REF	NovoNordisk-OpenSource/whirl/.github/workflows/check_and_co.yaml@refs/heads/main
GITHUB_WORKFLOW_SHA	f262c31b7faa74b7d14f5f79cc778c17969153ff
GITHUB_WORKSPACE	/home/runner/work/whirl/whirl
GOROOT_1_22_X64	/opt/hostedtoolcache/go/1.22.12/x64
GOROOT_1_23_X64	/opt/hostedtoolcache/go/1.23.12/x64
GOROOT_1_24_X64	/opt/hostedtoolcache/go/1.24.10/x64
GOROOT_1_25_X64	/opt/hostedtoolcache/go/1.25.4/x64
GRADLE_HOME	/usr/share/gradle-9.2.0
HOME	/home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS	3650
HOMEBREW_NO_AUTO_UPDATE	1
ImageOS	ubuntu24
ImageVersion	20251112.124.1
IN_PKGDOWN	true
INVOCATION_ID	615afa78a6504f7d8bce19c1d9b99b68
JAVA_HOME	/usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64	/usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64	/usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64	/usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_25_X64	/usr/lib/jvm/temurin-25-jdk-amd64
JAVA_HOME_8_X64	/usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM	9:14248
LANG	C.UTF-8
LANGUAGE	en
LN_S	ln -s
LOGNAME	runner
MAKE	make
MEMORY_PRESSURE_WATCH	/sys/fs/cgroup/system.slice/hosted-compute-agent.service/memory.pressure
MEMORY_PRESSURE_WRITE	c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN	true
NVM_DIR	/home/runner/.nvm
PAGER	/usr/bin/pager
PATH	/opt/hostedtoolcache/pandoc/3.1.11/x64:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PIPX_BIN_DIR	/opt/pipx_bin
PIPX_HOME	/opt/pipx
PKGCACHE_HTTP_VERSION	2
POWERSHELL_DISTRIBUTION_CHANNEL	GitHub-Actions-ubuntu24
PROCESSX_PS1ae63a93e09a_1764594313	YES
PROCESSX_PS1bed3ce9fc80_1764594315	YES
PROCESSX_PS1c0b25c1cdce_1764594316	YES
PWD	/tmp/RtmpcvzNUO/file1bed7e910d8
QUARTO_DENO	/opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_FILE	dummy.qmd
QUARTO_EXECUTE_INFO	/tmp/RtmpcvzNUO/file1bed7e910d8/.quarto/quarto-session-temp64d4fcb1ac6ba5f1/9cd02509a2556164
QUARTO_PROFILE
QUARTO_PROJECT_DIR	/tmp/RtmpcvzNUO/file1bed7e910d8
QUARTO_PROJECT_ROOT	/tmp/RtmpcvzNUO/file1bed7e910d8
QUARTO_ROOT	/
R_ARCH
R_BROWSER	false
R_BZIPCMD	/usr/bin/bzip2
R_CLI_NUM_COLORS	256
R_DOC_DIR	/opt/R/4.5.2/lib/R/doc
R_GZIPCMD	/usr/bin/gzip
R_HOME	/opt/R/4.5.2/lib/R
R_INCLUDE_DIR	/opt/R/4.5.2/lib/R/include
R_LIB_FOR_PAK	/opt/R/4.5.2/lib/R/site-library
R_LIBS_SITE	/opt/R/4.5.2/lib/R/site-library
R_LIBS_USER	/home/runner/work/_temp/Library
R_PAPERSIZE	letter
R_PAPERSIZE_USER	letter
R_PDFVIEWER	false
R_PLATFORM	x86_64-pc-linux-gnu
R_PRINTCMD	/usr/bin/lpr
R_RD4PDF	times,inconsolata,hyper
R_SESSION_TMPDIR	/tmp/RtmpaFr0hp
R_SHARE_DIR	/opt/R/4.5.2/lib/R/share
R_STRIP_SHARED_LIB	strip --strip-unneeded
R_STRIP_STATIC_LIB	strip --strip-debug
R_TESTS
R_TEXI2DVICMD	/usr/bin/texi2dvi
R_UNZIPCMD	/usr/bin/unzip
R_ZIPCMD	/usr/bin/zip
RENV_CONFIG_REPOS_OVERRIDE	https://packagemanager.posit.co/cran/__linux__/noble/latest
RSPM	https://packagemanager.posit.co/cran/__linux__/noble/latest
RUNNER_ARCH	X64
RUNNER_ENVIRONMENT	github-hosted
RUNNER_NAME	GitHub Actions 1000012121
RUNNER_OS	Linux
RUNNER_TEMP	/home/runner/work/_temp
RUNNER_TOOL_CACHE	/opt/hostedtoolcache
RUNNER_TRACKING_ID	github_3a2d102f-67de-4d2e-9739-a97be2c87707
RUNNER_WORKSPACE	/home/runner/work/whirl
SED	/usr/bin/sed
SGX_AESM_ADDR	1
SHELL	/bin/bash
SHLVL	1
SYSTEMD_EXEC_PID	1894
TAR	/usr/bin/tar
TERM	dumb
TEXINPUTS	:/home/runner/work/whirl/whirl/vignettes/articles:/opt/R/4.5.2/lib/R/share/texmf/tex/latex
TZ	UTC
USER	runner
VCPKG_INSTALLATION_ROOT	/usr/local/share/vcpkg
WHIRL_LOG_MSG	/tmp/RtmpcvzNUO/file1bed7e910d8/log_msg.json
XDG_CONFIG_HOME	/home/runner/.config
XDG_RUNTIME_DIR	/run/user/1001

Options

Option	Value
add.smooth	TRUE
ambiguousMethodSelection	function (cond) , NULL
bitmapType	cairo
browser	false
browserNLdisabled	FALSE
callr.condition_handler_cli_message	function (msg) , {, custom_handler <- getOption("cli.default_handler"), if (is.function(custom_handler)) {, custom_handler(msg), }, else {, cli_server_default(msg), }, }
callr.rprofile_loaded	TRUE
catch.script.errors	FALSE
CBoundsCheck	FALSE
check.bounds	FALSE
citation.bibtex.max	1
continue	+
contrasts	contr.treatment, contr.poly
defaultPackages	datasets , utils , grDevices, graphics , stats , methods
demo.ask	default
deparse.cutoff	60
device	function (width = 7, height = 7, ...) , {, grDevices::pdf(NULL, width, height, ...), }
device.ask.default	FALSE
digits	7
dplyr.show_progress	TRUE
dvipscmd	dvips
echo	FALSE
editor	vi
encoding	native.enc
error	(function () , invokeRestart("abort"))()
example.ask	default
expressions	5000
help.search.types	vignette, demo , help
help.try.all.packages	FALSE
htmltools.preserve.raw	TRUE
HTTPUserAgent	R/4.5.2 (ubuntu-24.04) R (4.5.2 x86_64-pc-linux-gnu x86_64 linux-gnu)
internet.info	2
keep.parse.data	TRUE
keep.parse.data.pkgs	FALSE
keep.source	FALSE
keep.source.pkgs	FALSE
knitr.graphics.rel_path	FALSE
knitr.in.progress	TRUE
locatorBell	TRUE
mailer	mailto
matprod	default
max.contour.segments	25000
max.print	99999
menu.graphics	TRUE
na.action	na.omit
Ncpus	1
nwarnings	50
OutDec	.
pager	/opt/R/4.5.2/lib/R/bin/pager
papersize	letter
PCRE_limit_recursion	NA
PCRE_study	FALSE
PCRE_use_JIT	TRUE
pdfviewer	false
pkgType	source
printcmd	/usr/bin/lpr
prompt	>
repos	https://packagemanager.posit.co/cran/__linux__/noble/latest, https://cran.rstudio.com
rlang_trace_top_env	<environment: R_GlobalEnv>
scipen	0
show.coef.Pvalues	TRUE
show.error.messages	TRUE
show.signif.stars	TRUE
showErrorCalls	TRUE
showNCalls	50
showWarnCalls	FALSE
str	no, 3, 4, 99, TRUE, function (x, ...) , format(x, trim = TRUE, drop0trailing = TRUE, ...)
str.dendrogram.last	`
texi2dvi	/usr/bin/texi2dvi
tikzMetricsDictionary	example-tikzDictionary
timeout	60
try.outFile	3
ts.eps	1e-05
ts.S.compat	FALSE
unzip	/usr/bin/unzip
useFancyQuotes	FALSE
verbose	FALSE
warn	0
warning.length	1000
warnPartialMatchArgs	FALSE
warnPartialMatchAttr	FALSE
warnPartialMatchDollar	FALSE
whirl.track_files	TRUE
whirl.verbosity_level	minimal
width	80