example.R

Execution end time

2026-07-06T10:24:27 Coordinated Universal Time

Path to script

/tmp/RtmpY3lOrt/file1c6e65b69c68/example.R

Summary

success

Input

Time	File
2026-07-06 10:24:18	/dev/urandom
2026-07-06 10:24:19	/home/runner/.Rprofile

Output

Time	File
2026-07-06 10:24:18	/dev/null
2026-07-06 10:24:18	/home/runner/.cache/deno/location_data/28cae0874d2cd1a477303d1189f80977214036c3c5b0efb610c4fbbeddbd8b3e/local_storage
2026-07-06 10:24:18	/home/runner/.cache/deno/location_data/28cae0874d2cd1a477303d1189f80977214036c3c5b0efb610c4fbbeddbd8b3e/local_storage-wal
2026-07-06 10:24:18	/home/runner/.cache/deno/location_data/28cae0874d2cd1a477303d1189f80977214036c3c5b0efb610c4fbbeddbd8b3e/local_storage-shm

Removed

No files

Script

Setup

library(dplyr)

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

library(ggplot2)

Prepare data

x <- mtcars |>
  as_tibble(rownames = "car")

print(x)

[38;5;246m# A tibble: 32 × 12[39m
   car           mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb
   [3m[38;5;246m<chr>[39m[23m       [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m
[38;5;250m 1[39m Mazda RX4    21       6  160    110  3.9   2.62  16.5     0     1     4     4
[38;5;250m 2[39m Mazda RX4 …  21       6  160    110  3.9   2.88  17.0     0     1     4     4
[38;5;250m 3[39m Datsun 710   22.8     4  108     93  3.85  2.32  18.6     1     1     4     1
[38;5;250m 4[39m Hornet 4 D…  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1
[38;5;250m 5[39m Hornet Spo…  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2
[38;5;250m 6[39m Valiant      18.1     6  225    105  2.76  3.46  20.2     1     0     3     1
[38;5;250m 7[39m Duster 360   14.3     8  360    245  3.21  3.57  15.8     0     0     3     4
[38;5;250m 8[39m Merc 240D    24.4     4  147.    62  3.69  3.19  20       1     0     4     2
[38;5;250m 9[39m Merc 230     22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2
[38;5;250m10[39m Merc 280     19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4
[38;5;246m# ℹ 22 more rows[39m

Create and save plot

ggplot(data = x) +
  geom_point(mapping = aes(x = mpg, y = hp, size = wt, colour = as.factor(am)))

ggsave("plot1.png")

[1m[22mSaving 7 x 5 in image

Session info

Platform

Setting	Value
version	R version 4.6.1 (2026-06-24)
os	Ubuntu 24.04.4 LTS
system	x86_64, linux-gnu
ui	X11
language	en
collate	C.UTF-8
ctype	C.UTF-8
tz	UTC
date	2026-07-06
pandoc	3.8.3 @ /opt/hostedtoolcache/pandoc/3.8.3/x64/ (via rmarkdown)
quarto	1.9.38 @ /usr/local/bin/quarto

R packages used directly

Package	Version	Source
dplyr	1.2.1	RSPM
ggplot2	4.0.3	RSPM
knitr	1.51	RSPM
reticulate	1.46.0	RSPM
rmarkdown	2.31	RSPM
sessioninfo	1.2.4	RSPM

R packages used indirectly

Package	Version	Source
cli	3.6.6	RSPM
digest	0.6.39	RSPM
evaluate	1.0.5	RSPM
farver	2.1.2	RSPM
fastmap	1.2.0	RSPM
generics	0.1.4	RSPM
glue	1.8.1	RSPM
gtable	0.3.6	RSPM
htmltools	0.5.9	RSPM
jsonlite	2.0.0	RSPM
labeling	0.4.3	RSPM
lattice	0.22-9	CRAN (R 4.6.1)
lifecycle	1.0.5	RSPM
magrittr	2.0.5	RSPM
Matrix	1.7-5	CRAN (R 4.6.1)
otel	0.2.0	RSPM
pillar	1.11.1	RSPM
pkgconfig	2.0.3	RSPM
png	0.1-9	RSPM
R6	2.6.1	RSPM
ragg	1.5.2	RSPM
RColorBrewer	1.1-3	RSPM
Rcpp	1.1.1-1.1	RSPM
rlang	1.2.0	RSPM
S7	0.2.2	RSPM
scales	1.4.0	RSPM
systemfonts	1.3.2	RSPM
textshaping	1.0.5	RSPM
tibble	3.3.1	RSPM
tidyselect	1.2.1	RSPM
utf8	1.2.6	RSPM
vctrs	0.7.3	RSPM
withr	3.0.3	RSPM
xfun	0.59	RSPM
yaml	2.3.12	RSPM

Environment variables

Variable	Value
_R_CHECK_SYSTEM_CLOCK_	FALSE
ACCEPT_EULA	Y
ACTIONS_ORCHESTRATION_ID	10628207-40ea-44d2-a6ef-1fd3fda92a15.pkgdown.pkgdown.__default
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE	/opt/actionarchivecache
ACTIONS_RUNNER_RETURN_JOB_RESULT_FOR_HOSTED	1
AGENT_TOOLSDIRECTORY	/opt/hostedtoolcache
ANDROID_HOME	/usr/local/lib/android/sdk
ANDROID_NDK	/usr/local/lib/android/sdk/ndk/27.3.13750724
ANDROID_NDK_HOME	/usr/local/lib/android/sdk/ndk/27.3.13750724
ANDROID_NDK_LATEST_HOME	/usr/local/lib/android/sdk/ndk/29.0.14206865
ANDROID_NDK_ROOT	/usr/local/lib/android/sdk/ndk/27.3.13750724
ANDROID_SDK_ROOT	/usr/local/lib/android/sdk
ANT_HOME	/usr/share/ant
AZURE_EXTENSION_DIR	/opt/az/azcliextensions
BIBINPUTS	::/home/runner/work/whirl/whirl/vignettes/articles:/opt/R/4.6.1/lib/R/share/texmf/tex/latex
BOOTSTRAP_HASKELL_NONINTERACTIVE	1
BSTINPUTS	:/home/runner/work/whirl/whirl/vignettes/articles:/opt/R/4.6.1/lib/R/share/texmf/bibtex/bst
BUNDLE_EXT	linux-amd64.deb
CALLR_IS_RUNNING	true
CHROME_BIN	/usr/bin/google-chrome
CHROMEWEBDRIVER	/usr/local/share/chromedriver-linux64
CI	true
CONDA	/usr/share/miniconda
CYGWIN	nodosfilewarning
DEBIAN_FRONTEND	noninteractive
DENO_DOM_PLUGIN	/opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK	1
DENO_TLS_CA_STORE	system,mozilla
DOTNET_MULTILEVEL_LOOKUP	0
DOTNET_NOLOGO	1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE	1
EDGEWEBDRIVER	/usr/local/share/edge_driver
EDITOR	vi
ENABLE_RUNNER_TRACING	true
GECKOWEBDRIVER	/usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX	/usr/local
GITHUB_ACTION	__run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS	true
GITHUB_ACTOR	akselthomsen
GITHUB_ACTOR_ID	14150030
GITHUB_API_URL	https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV	/home/runner/work/_temp/_runner_file_commands/set_env_316be65e-dc54-42fe-aabe-055ca4337661
GITHUB_EVENT_NAME	push
GITHUB_GRAPHQL_URL	https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB	pkgdown
GITHUB_OUTPUT	/home/runner/work/_temp/_runner_file_commands/set_output_316be65e-dc54-42fe-aabe-055ca4337661
GITHUB_REF	refs/heads/main
GITHUB_REF_NAME	main
GITHUB_REF_PROTECTED	true
GITHUB_REF_TYPE	branch
GITHUB_REPOSITORY	NovoNordisk-OpenSource/whirl
GITHUB_REPOSITORY_ID	865991741
GITHUB_REPOSITORY_OWNER	NovoNordisk-OpenSource
GITHUB_REPOSITORY_OWNER_ID	129066790
GITHUB_RETENTION_DAYS	90
GITHUB_RUN_ATTEMPT	1
GITHUB_RUN_ID	28784645336
GITHUB_RUN_NUMBER	545
GITHUB_SERVER_URL	https://github.com
GITHUB_SHA	8285c3c48c5399035bd42f844d7932832bbd2840
GITHUB_STATE	/home/runner/work/_temp/_runner_file_commands/save_state_316be65e-dc54-42fe-aabe-055ca4337661
GITHUB_STEP_SUMMARY	/home/runner/work/_temp/_runner_file_commands/step_summary_316be65e-dc54-42fe-aabe-055ca4337661
GITHUB_TRIGGERING_ACTOR	akselthomsen
GITHUB_WORKFLOW	All actions
GITHUB_WORKFLOW_REF	NovoNordisk-OpenSource/whirl/.github/workflows/check_and_co.yaml@refs/heads/main
GITHUB_WORKFLOW_SHA	8285c3c48c5399035bd42f844d7932832bbd2840
GITHUB_WORKSPACE	/home/runner/work/whirl/whirl
GOROOT_1_24_X64	/opt/hostedtoolcache/go/1.24.13/x64
GOROOT_1_25_X64	/opt/hostedtoolcache/go/1.25.11/x64
GOROOT_1_26_X64	/opt/hostedtoolcache/go/1.26.4/x64
GRADLE_HOME	/usr/share/gradle-9.6.1
HCA_CLOUD_PROVIDER	azure
HOME	/home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS	3650
HOMEBREW_NO_AUTO_UPDATE	1
ImageOS	ubuntu24
ImageVersion	20260628.225.1
IN_PKGDOWN	true
INVOCATION_ID	ab21c8d7f82c47a4a129ce6563ffea7f
JAVA_HOME	/usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64	/usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64	/usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64	/usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_25_X64	/usr/lib/jvm/temurin-25-jdk-amd64
JAVA_HOME_8_X64	/usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM	9:14810
LANG	C.UTF-8
LANGUAGE	en
LN_S	ln -s
LOGNAME	runner
MAKE	make
MEMORY_PRESSURE_WATCH	/sys/fs/cgroup/system.slice/hosted-compute-agent.service/memory.pressure
MEMORY_PRESSURE_WRITE	c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN	true
NVM_DIR	/home/runner/.nvm
PAGER	/usr/bin/pager
PATH	/opt/hostedtoolcache/pandoc/3.8.3/x64:/home/runner/work/_temp/uv-python-dir:/opt/hostedtoolcache/uv/0.11.26/x86_64:/home/runner/.local/bin:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
PIPX_BIN_DIR	/opt/pipx_bin
PIPX_HOME	/opt/pipx
PKGCACHE_HTTP_VERSION	2
POWERSHELL_DISTRIBUTION_CHANNEL	GitHub-Actions-Linux
PROCESSX_PS1b655bbf1965_1783333455	YES
PROCESSX_PS1c6e17fbe1a8_1783333457	YES
PROCESSX_PS1c8c7f05a42b_1783333458	YES
PSModulePath	/root/.local/share/powershell/Modules:/usr/local/share/powershell/Modules:/opt/microsoft/powershell/7/Modules:/usr/share/az_15.6.1
PWD	/tmp/RtmpY3lOrt/file1c6e30ddb92b
QUARTO_DENO	/opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_FILE	dummy.qmd
QUARTO_EXECUTE_INFO	/tmp/RtmpY3lOrt/file1c6e30ddb92b/.quarto/quarto-session-temp948584352192df9d/a2b6955bea4775d1
QUARTO_PROFILE
QUARTO_PROJECT_DIR	/tmp/RtmpY3lOrt/file1c6e30ddb92b
QUARTO_PROJECT_ROOT	/tmp/RtmpY3lOrt/file1c6e30ddb92b
QUARTO_ROOT	/
R_ARCH
R_BROWSER	false
R_BZIPCMD	/usr/bin/bzip2
R_CLI_NUM_COLORS	256
R_DOC_DIR	/opt/R/4.6.1/lib/R/doc
R_GZIPCMD	/usr/bin/gzip
R_HOME	/opt/R/4.6.1/lib/R
R_INCLUDE_DIR	/opt/R/4.6.1/lib/R/include
R_LIB_FOR_PAK	/opt/R/4.6.1/lib/R/site-library
R_LIBS_SITE	/opt/R/4.6.1/lib/R/site-library
R_LIBS_USER	/home/runner/work/_temp/Library
R_PAPERSIZE	letter
R_PAPERSIZE_USER	letter
R_PDFVIEWER	false
R_PLATFORM	x86_64-pc-linux-gnu
R_PRINTCMD	/usr/bin/lpr
R_RD4PDF	times,inconsolata,hyper
R_SESSION_TMPDIR	/tmp/RtmpjetusP
R_SHARE_DIR	/opt/R/4.6.1/lib/R/share
R_STRIP_SHARED_LIB	strip --strip-unneeded
R_STRIP_STATIC_LIB	strip --strip-debug
R_TESTS
R_TEXI2DVICMD	/usr/bin/texi2dvi
R_UNZIPCMD	/usr/bin/unzip
R_ZIPCMD	/usr/bin/zip
RENV_CONFIG_REPOS_OVERRIDE	https://packagemanager.posit.co/cran/__linux__/noble/latest
RSPM	https://packagemanager.posit.co/cran/__linux__/noble/latest
RUNNER_ARCH	X64
RUNNER_ENVIRONMENT	github-hosted
RUNNER_NAME	GitHub Actions 1000023964
RUNNER_OS	Linux
RUNNER_TEMP	/home/runner/work/_temp
RUNNER_TOOL_CACHE	/opt/hostedtoolcache
RUNNER_TRACKING_ID	github_31ea3447-0fea-41c1-8b0f-347b0bc07d2f
RUNNER_WORKSPACE	/home/runner/work/whirl
SED	/usr/bin/sed
SGX_AESM_ADDR	1
SHELL	/bin/bash
SHLVL	1
SYSTEMD_EXEC_PID	1882
TAR	/usr/bin/tar
TERM	dumb
TEXINPUTS	:/home/runner/work/whirl/whirl/vignettes/articles:/opt/R/4.6.1/lib/R/share/texmf/tex/latex
TZ	UTC
USE_BAZEL_FALLBACK_VERSION	silent:
USER	runner
UV_CACHE_DIR	/home/runner/work/_temp/setup-uv-cache
UV_PYTHON_INSTALL_DIR	/home/runner/work/_temp/uv-python-dir
VCPKG_INSTALLATION_ROOT	/usr/local/share/vcpkg
VIRTUAL_ENV	/home/runner/work/whirl/whirl/.venv
WHIRL_LOG_MSG	/tmp/RtmpY3lOrt/file1c6e30ddb92b/log_msg.json
XDG_CONFIG_HOME	/home/runner/.config
XDG_RUNTIME_DIR	/run/user/1001

Options

Option	Value
add.smooth	TRUE
ambiguousMethodSelection	function (cond) , NULL
bitmapType	cairo
browser	false
browserNLdisabled	FALSE
callr.condition_handler_cli_message	function (msg) , {, custom_handler <- getOption("cli.default_handler"), if (is.function(custom_handler)) {, custom_handler(msg), }, else {, cli_server_default(msg), }, }
catch.script.errors	FALSE
CBoundsCheck	FALSE
check.bounds	FALSE
citation.bibtex.max	1
continue	+
contrasts	contr.treatment, contr.poly
defaultPackages	datasets , utils , grDevices, graphics , stats , methods
demo.ask	default
deparse.cutoff	60
device	function (width = 7, height = 7, ...) , {, grDevices::pdf(NULL, width, height, ...), }
device.ask.default	FALSE
digits	7
dvipscmd	dvips
echo	FALSE
editor	vi
encoding	native.enc
example.ask	default
expressions	5000
help.search.types	vignette, demo , help
help.try.all.packages	FALSE
htmltools.preserve.raw	TRUE
HTTPUserAgent	R/4.6.1 R (4.6.1 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions
internet.info	2
keep.parse.data	TRUE
keep.parse.data.pkgs	FALSE
keep.source	FALSE
keep.source.pkgs	FALSE
knitr.in.progress	TRUE
locatorBell	TRUE
mailer	mailto
matprod	default
max.contour.segments	25000
max.print	99999
menu.graphics	TRUE
na.action	na.omit
Ncpus	1
nwarnings	50
OutDec	.
pager	/opt/R/4.6.1/lib/R/bin/pager
papersize	letter
PCRE_limit_recursion	NA
PCRE_study	FALSE
PCRE_use_JIT	TRUE
pdfviewer	false
pkgType	source
printcmd	/usr/bin/lpr
prompt	>
quiet	TRUE
repos	https://packagemanager.posit.co/cran/__linux__/noble/latest, https://cran.rstudio.com
rlang_trace_top_env	<environment: R_GlobalEnv>
scipen	0
show.coef.Pvalues	TRUE
show.error.messages	TRUE
show.signif.stars	TRUE
showErrorCalls	TRUE
showNCalls	50
showWarnCalls	FALSE
str	no, 3, 4, 99, TRUE, function (x, ...) , format(x, trim = TRUE, drop0trailing = TRUE, ...)
str.dendrogram.last	`
texi2dvi	/usr/bin/texi2dvi
tikzMetricsDictionary	dummy-tikzDictionary
timeout	60
try.outFile	3
ts.eps	1e-05
ts.S.compat	FALSE
unzip	/usr/bin/unzip
useFancyQuotes	FALSE
verbose	FALSE
warn	0
warning.length	1000
warnPartialMatchArgs	FALSE
warnPartialMatchAttr	FALSE
warnPartialMatchDollar	FALSE
width	80