example.R

Execution end time

2024-12-17T13:30:30 Coordinated Universal Time

Path to script

/tmp/RtmpRo1Unc/file21ebc7946ee/example.R

Summary

success

Input

time	file
2024-12-17 13:30:21	/dev/urandom
2024-12-17 13:30:22	/home/runner/.Rprofile
2024-12-17 13:30:23	/tmp/RtmpRo1Unc/file21ebc7946ee/example.R

Output

time	file
2024-12-17 13:30:21	/dev/null
2024-12-17 13:30:24	/tmp/RtmpRo1Unc/file21ebc7946ee/plot1.png

Removed

file
No files

Script

Setup

library(dplyr)

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

library(ggplot2)

Prepare data

x <- mtcars |>
  as_tibble(rownames = "car")

print(x)

[38;5;246m# A tibble: 32 × 12[39m
   car           mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb
   [3m[38;5;246m<chr>[39m[23m       [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m
[38;5;250m 1[39m Mazda RX4    21       6  160    110  3.9   2.62  16.5     0     1     4     4
[38;5;250m 2[39m Mazda RX4 …  21       6  160    110  3.9   2.88  17.0     0     1     4     4
[38;5;250m 3[39m Datsun 710   22.8     4  108     93  3.85  2.32  18.6     1     1     4     1
[38;5;250m 4[39m Hornet 4 D…  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1
[38;5;250m 5[39m Hornet Spo…  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2
[38;5;250m 6[39m Valiant      18.1     6  225    105  2.76  3.46  20.2     1     0     3     1
[38;5;250m 7[39m Duster 360   14.3     8  360    245  3.21  3.57  15.8     0     0     3     4
[38;5;250m 8[39m Merc 240D    24.4     4  147.    62  3.69  3.19  20       1     0     4     2
[38;5;250m 9[39m Merc 230     22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2
[38;5;250m10[39m Merc 280     19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4
[38;5;246m# ℹ 22 more rows[39m

Create and save plot

ggplot(data = x) +
  geom_point(mapping = aes(x = mpg, y = hp, size = wt, colour = as.factor(am)))

ggsave("plot1.png")

[1m[22mSaving 7 x 5 in image

Session info

Platform

Setting	Value
version	R version 4.4.2 (2024-10-31)
os	Ubuntu 24.04.1 LTS
system	x86_64, linux-gnu
ui	X11
language	en
collate	C.UTF-8
ctype	C.UTF-8
tz	UTC
date	2024-12-17
pandoc	3.1.11 @ /opt/hostedtoolcache/pandoc/3.1.11/x64/ (via rmarkdown)
quarto	1.6.39 @ /opt/quarto/bin/quarto

R Packages

Package	Version	Date (UTC)	Source
callr	3.7.6	2024-03-25	RSPM
cli	3.6.3	2024-06-21	RSPM
colorspace	2.1-1	2024-07-26	RSPM
digest	0.6.37	2024-08-19	RSPM
dplyr	1.1.4	2023-11-17	RSPM
evaluate	1.0.1	2024-10-10	RSPM
fansi	1.0.6	2023-12-08	RSPM
farver	2.1.2	2024-05-13	RSPM
fastmap	1.2.0	2024-05-15	RSPM
generics	0.1.3	2022-07-05	RSPM
ggplot2	3.5.1	2024-04-23	RSPM
glue	1.8.0	2024-09-30	RSPM
gtable	0.3.6	2024-10-25	RSPM
htmltools	0.5.8.1	2024-04-04	RSPM
jsonlite	1.8.9	2024-09-20	RSPM
knitr	1.49	2024-11-08	RSPM
labeling	0.4.3	2023-08-29	RSPM
lattice	0.22-6	2024-03-20	CRAN (R 4.4.2)
lifecycle	1.0.4	2023-11-07	RSPM
magrittr	2.0.3	2022-03-30	RSPM
Matrix	1.7-1	2024-10-18	CRAN (R 4.4.2)
munsell	0.5.1	2024-04-01	RSPM
pillar	1.9.0	2023-03-22	RSPM
pkgconfig	2.0.3	2019-09-22	RSPM
png	0.1-8	2022-11-29	RSPM
processx	3.8.4	2024-03-16	RSPM
ps	1.8.1	2024-10-28	RSPM
R6	2.5.1	2021-08-19	RSPM
ragg	1.3.3	2024-09-11	RSPM
Rcpp	1.0.13-1	2024-11-02	RSPM
reticulate	1.40.0	2024-11-15	RSPM
rlang	1.1.4	2024-06-04	RSPM
rmarkdown	2.29	2024-11-04	RSPM
scales	1.3.0	2023-11-28	RSPM
sessioninfo	1.2.2	2021-12-06	RSPM
systemfonts	1.1.0	2024-05-15	RSPM
textshaping	0.4.1	2024-12-06	RSPM
tibble	3.2.1	2023-03-20	RSPM
tidyselect	1.2.1	2024-03-11	RSPM
utf8	1.2.4	2023-10-22	RSPM
vctrs	0.6.5	2023-12-01	RSPM
whirl	0.1.7	2024-12-17	local
withr	3.0.2	2024-10-28	RSPM
xfun	0.49	2024-10-31	RSPM
yaml	2.3.10	2024-07-26	RSPM

Environment variables

Setting	Value
_R_CHECK_SYSTEM_CLOCK_	FALSE
ACCEPT_EULA	Y
ACTIONS_RUNNER_ACTION_ARCHIVE_CACHE	/opt/actionarchivecache
AGENT_TOOLSDIRECTORY	/opt/hostedtoolcache
ANDROID_HOME	/usr/local/lib/android/sdk
ANDROID_NDK	/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_HOME	/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_LATEST_HOME	/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_NDK_ROOT	/usr/local/lib/android/sdk/ndk/27.2.12479018
ANDROID_SDK_ROOT	/usr/local/lib/android/sdk
ANT_HOME	/usr/share/ant
AZURE_EXTENSION_DIR	/opt/az/azcliextensions
BIBINPUTS	::/home/runner/work/whirl/whirl/vignettes/ar<br>ticles:/opt/R/4.4.2/lib/R/share/texmf/tex/lat<br>ex
BOOTSTRAP_HASKELL_NONINTERACTIVE	1
BSTINPUTS	:/home/runner/work/whirl/whirl/vignettes/art<br>icles:/opt/R/4.4.2/lib/R/share/texmf/bibtex/b<br>st
BUNDLE_EXT	linux-amd64.deb
CALLR_IS_RUNNING	true
CHROME_BIN	/usr/bin/google-chrome
CHROMEWEBDRIVER	/usr/local/share/chromedriver-linux64
CI	true
CONDA	/usr/share/miniconda
CYGWIN	nodosfilewarning
DEBIAN_FRONTEND	noninteractive
DENO_DOM_PLUGIN	/opt/quarto/bin/tools/x86_64/deno_dom/libplu<br>gin.so
DENO_NO_UPDATE_CHECK	1
DENO_TLS_CA_STORE	system,mozilla
DEPLOYMENT_BASEPATH	/opt/runner
DOTNET_MULTILEVEL_LOOKUP	0
DOTNET_NOLOGO	1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE	1
EDGEWEBDRIVER	/usr/local/share/edge_driver
EDITOR	vi
GECKOWEBDRIVER	/usr/local/share/gecko_driver
GHCUP_INSTALL_BASE_PREFIX	/usr/local
GITHUB_ACTION	__run
GITHUB_ACTION_REF
GITHUB_ACTION_REPOSITORY
GITHUB_ACTIONS	true
GITHUB_ACTOR	akselthomsen
GITHUB_ACTOR_ID	14150030
GITHUB_API_URL	https://api.github.com
GITHUB_BASE_REF
GITHUB_ENV	/home/runner/work/_temp/_runner_file_command<br>s/set_env_4a7c7563-e3b9-4b8e-b252-f75629b77fd<br>7
GITHUB_EVENT_NAME	push
GITHUB_EVENT_PATH	/home/runner/work/_temp/_github_workflow/eve<br>nt.json
GITHUB_GRAPHQL_URL	https://api.github.com/graphql
GITHUB_HEAD_REF
GITHUB_JOB	pkgdown
GITHUB_OUTPUT	/home/runner/work/_temp/_runner_file_command<br>s/set_output_4a7c7563-e3b9-4b8e-b252-f75629b7<br>7fd7
GITHUB_PATH	/home/runner/work/_temp/_runner_file_command<br>s/add_path_4a7c7563-e3b9-4b8e-b252-f75629b77f<br>d7
GITHUB_REF	refs/heads/main
GITHUB_REF_NAME	main
GITHUB_REF_PROTECTED	true
GITHUB_REF_TYPE	branch
GITHUB_REPOSITORY	NovoNordisk-OpenSource/whirl
GITHUB_REPOSITORY_ID	865991741
GITHUB_REPOSITORY_OWNER	NovoNordisk-OpenSource
GITHUB_REPOSITORY_OWNER_ID	129066790
GITHUB_RETENTION_DAYS	90
GITHUB_RUN_ATTEMPT	1
GITHUB_RUN_ID	12373975363
GITHUB_RUN_NUMBER	127
GITHUB_SERVER_URL	https://github.com
GITHUB_SHA	81e06116326dd1ccf145b3acfc688c2cbe0a075b
GITHUB_STATE	/home/runner/work/_temp/_runner_file_command<br>s/save_state_4a7c7563-e3b9-4b8e-b252-f75629b7<br>7fd7
GITHUB_STEP_SUMMARY	/home/runner/work/_temp/_runner_file_command<br>s/step_summary_4a7c7563-e3b9-4b8e-b252-f75629<br>b77fd7
GITHUB_TRIGGERING_ACTOR	akselthomsen
GITHUB_WORKFLOW	All actions
GITHUB_WORKFLOW_REF	NovoNordisk-OpenSource/whirl/.github/workflo<br>ws/check_and_co.yaml@refs/heads/main
GITHUB_WORKFLOW_SHA	81e06116326dd1ccf145b3acfc688c2cbe0a075b
GITHUB_WORKSPACE	/home/runner/work/whirl/whirl
GOROOT_1_21_X64	/opt/hostedtoolcache/go/1.21.13/x64
GOROOT_1_22_X64	/opt/hostedtoolcache/go/1.22.10/x64
GOROOT_1_23_X64	/opt/hostedtoolcache/go/1.23.4/x64
GRADLE_HOME	/usr/share/gradle-8.11.1
HOME	/home/runner
HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS	3650
HOMEBREW_NO_AUTO_UPDATE	1
ImageOS	ubuntu24
ImageVersion	20241215.1.0
IN_PKGDOWN	true
INVOCATION_ID	7b46bab7c6cf49aba247c71b53f8423a
JAVA_HOME	/usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_11_X64	/usr/lib/jvm/temurin-11-jdk-amd64
JAVA_HOME_17_X64	/usr/lib/jvm/temurin-17-jdk-amd64
JAVA_HOME_21_X64	/usr/lib/jvm/temurin-21-jdk-amd64
JAVA_HOME_8_X64	/usr/lib/jvm/temurin-8-jdk-amd64
JOURNAL_STREAM	8:7492
LANG	C.UTF-8
LANGUAGE	en
LD_LIBRARY_PATH	/opt/R/4.4.2/lib/R/lib:/usr/local/lib:/usr/l<br>ib/x86_64-linux-gnu:/usr/lib/jvm/temurin-17-j<br>dk-amd64/lib/server:/opt/R/4.4.2/lib/R/lib:/u<br>sr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/l<br>ib/jvm/temurin-17-jdk-amd64/lib/server:/opt/R<br>/4.4.2/lib/R/lib:/usr/local/lib:/usr/lib/x86_<br>64-linux-gnu:/usr/lib/jvm/temurin-17-jdk-amd6<br>4/lib/server:/opt/R/4.4.2/lib/R/lib:/usr/loca<br>l/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/<br>temurin-17-jdk-amd64/lib/server
LN_S	ln -s
MAKE	make
MEMORY_PRESSURE_WATCH	/sys/fs/cgroup/system.slice/runner-provision<br>er.service/memory.pressure
MEMORY_PRESSURE_WRITE	c29tZSAyMDAwMDAgMjAwMDAwMAA=
NOT_CRAN	true
NVM_DIR	/home/runner/.nvm
PAGER	/usr/bin/pager
PATH	/opt/hostedtoolcache/pandoc/3.1.11/x64:/snap<br>/bin:/home/runner/.local/bin:/opt/pipx_bin:/h<br>ome/runner/.cargo/bin:/home/runner/.config/co<br>mposer/vendor/bin:/usr/local/.ghcup/bin:/home<br>/runner/.dotnet/tools:/usr/local/sbin:/usr/lo<br>cal/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/ga<br>mes:/usr/local/games:/snap/bin
PERFLOG_LOCATION_SETTING	RUNNER_PERFLOG
PIPX_BIN_DIR	/opt/pipx_bin
PIPX_HOME	/opt/pipx
PKGCACHE_HTTP_VERSION	2
POWERSHELL_DISTRIBUTION_CHANNEL	GitHub-Actions-ubuntu24
PROCESSX_PS5EK69GWX7H_1734442219	YES
PROCESSX_PSDIK6HO6GB3_1734442221	YES
PROCESSX_PSWL4DIEEXOM_1734442221	YES
PWD	/tmp/RtmpRo1Unc/file21eb67a9b8f1
QUARTO_BIN_PATH	/opt/quarto/bin
QUARTO_DENO	/opt/quarto/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH	/tmp/RtmpRo1Unc/file21eb67a9b8f1
QUARTO_PROFILE
QUARTO_PROJECT_DIR	/tmp/RtmpRo1Unc/file21eb67a9b8f1
QUARTO_PROJECT_ROOT	/tmp/RtmpRo1Unc/file21eb67a9b8f1
QUARTO_ROOT	/
QUARTO_SHARE_PATH	/opt/quarto/share
R_ARCH
R_BROWSER	false
R_BZIPCMD	/usr/bin/bzip2
R_CLI_NUM_COLORS	256
R_DOC_DIR	/opt/R/4.4.2/lib/R/doc
R_GZIPCMD	/usr/bin/gzip
R_HOME	/opt/R/4.4.2/lib/R
R_INCLUDE_DIR	/opt/R/4.4.2/lib/R/include
R_LIB_FOR_PAK	/opt/R/4.4.2/lib/R/site-library
R_LIBS_SITE	/opt/R/4.4.2/lib/R/site-library
R_LIBS_USER	/home/runner/work/_temp/Library
R_PAPERSIZE	letter
R_PAPERSIZE_USER	letter
R_PDFVIEWER	false
R_PLATFORM	x86_64-pc-linux-gnu
R_PRINTCMD	/usr/bin/lpr
R_RD4PDF	times,inconsolata,hyper
R_SESSION_TMPDIR	/tmp/Rtmpsq5Ffc
R_SHARE_DIR	/opt/R/4.4.2/lib/R/share
R_STRIP_SHARED_LIB	strip --strip-unneeded
R_STRIP_STATIC_LIB	strip --strip-debug
R_TESTS
R_TEXI2DVICMD	/usr/bin/texi2dvi
R_UNZIPCMD	/usr/bin/unzip
R_ZIPCMD	/usr/bin/zip
RENV_CONFIG_REPOS_OVERRIDE	https://packagemanager.posit.co/cran/__linux<br>__/noble/latest
RSPM	https://packagemanager.posit.co/cran/__linux<br>__/noble/latest
RUNNER_ARCH	X64
RUNNER_ENVIRONMENT	github-hosted
RUNNER_NAME	GitHub Actions 11
RUNNER_OS	Linux
RUNNER_PERFLOG	/home/runner/perflog
RUNNER_TEMP	/home/runner/work/_temp
RUNNER_TOOL_CACHE	/opt/hostedtoolcache
RUNNER_TRACKING_ID	github_fd484d07-f4b1-4c61-bafc-3d552a38fb76
RUNNER_USER	runner
RUNNER_WORKSPACE	/home/runner/work/whirl
SED	/usr/bin/sed
SELENIUM_JAR_PATH	/usr/share/java/selenium-server.jar
SGX_AESM_ADDR	1
SHLVL	1
STATS_D	true
STATS_D_D	true
STATS_D_TC	true
STATS_EXT	true
STATS_EXTP	https://provjobdprod.z13.web.core.windows.ne<br>t/settings/provjobdsettings-latest/provjobd.d<br>ata
STATS_PIP	false
STATS_RDCL	true
STATS_TRP	true
STATS_UE	true
STATS_V3PS	true
STATS_VMD	true
STATS_VMFE	true
SWIFT_PATH	/usr/share/swift/usr/bin
SYSTEMD_EXEC_PID	836
TAR	/usr/bin/tar
TERM	dumb
TEXINPUTS	:/home/runner/work/whirl/whirl/vignettes/art<br>icles:/opt/R/4.4.2/lib/R/share/texmf/tex/late<br>x
TZ	UTC
USER	runner
VCPKG_INSTALLATION_ROOT	/usr/local/share/vcpkg
WHIRL_LOG_MSG	/tmp/RtmpRo1Unc/file21eb67a9b8f1/log_msg.jso<br>n
XDG_CONFIG_HOME	/home/runner/.config
XDG_RUNTIME_DIR	/run/user/1001

Option settings

Setting	Value
add.smooth	TRUE
ambiguousMethodSelection	function (cond) , NULL
bitmapType	cairo
browser	false
browserNLdisabled	FALSE
callr.condition_handler_cli_message	function (msg) , {, custom_handler <- getOption("cli.default_handler"), if (is.function(custom_handler)) {, custom_handler(msg), }, else {, cli_server_default(msg), }, }
catch.script.errors	FALSE
CBoundsCheck	FALSE
check.bounds	FALSE
citation.bibtex.max	1
continue	+
contrasts.unordered	contr.treatment
contrasts.ordered	contr.poly
defaultPackages1	datasets
defaultPackages2	utils
defaultPackages3	grDevices
defaultPackages4	graphics
defaultPackages5	stats
defaultPackages6	methods
demo.ask	default
deparse.cutoff	60
device	function (width = 7, height = 7, ...) , {, grDevices::pdf(NULL, width, height, ...), }
device.ask.default	FALSE
digits	7
dplyr.show_progress	TRUE
dvipscmd	dvips
echo	FALSE
editor	vi
encoding	native.enc
example.ask	default
expressions	5000
help.search.types1	vignette
help.search.types2	demo
help.search.types3	help
help.try.all.packages	FALSE
htmltools.preserve.raw	TRUE
HTTPUserAgent	R/4.4.2 R (4.4.2 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions
internet.info	2
keep.parse.data	TRUE
keep.parse.data.pkgs	FALSE
keep.source	FALSE
keep.source.pkgs	FALSE
knitr.in.progress	TRUE
locatorBell	TRUE
mailer	mailto
matprod	default
max.contour.segments	25000
max.print	99999
menu.graphics	TRUE
na.action	na.omit
Ncpus	1
nwarnings	50
OutDec	.
pager	/opt/R/4.4.2/lib/R/bin/pager
papersize	letter
PCRE_limit_recursion	NA
PCRE_study	FALSE
PCRE_use_JIT	TRUE
pdfviewer	false
pkgType	source
printcmd	/usr/bin/lpr
prompt	>
repos.RSPM	https://packagemanager.posit.co/cran/__linux__/noble/latest
repos.CRAN	https://cran.rstudio.com
scipen	0
show.coef.Pvalues	TRUE
show.error.messages	TRUE
show.signif.stars	TRUE
showErrorCalls	TRUE
showNCalls	50
showWarnCalls	FALSE
str.strict.width	no
str.digits.d	3
str.vec.len	4
str.list.len	99
str.drop.deparse.attr	TRUE
str.formatNum	function (x, ...) , format(x, trim = TRUE, drop0trailing = TRUE, ...)
str.dendrogram.last	`
texi2dvi	/usr/bin/texi2dvi
tikzMetricsDictionary	dummy-tikzDictionary
timeout	60
try.outFile	3
ts.eps	1e-05
ts.S.compat	FALSE
unzip	/usr/bin/unzip
useFancyQuotes	FALSE
verbose	FALSE
warn	0
warning.length	1000
warnPartialMatchArgs	FALSE
warnPartialMatchAttr	FALSE
warnPartialMatchDollar	FALSE
width	80